Package: stability 0.5.0

stability: Stability Analysis of Genotype by Environment Interaction (GEI)

Functionalities to perform Stability Analysis of Genotype by Environment Interaction (GEI) to identify superior and stable genotypes under diverse environments. It performs Eberhart & Russel's ANOVA (1966) (<doi:10.2135/cropsci1966.0011183X000600010011x>), Finlay and Wilkinson (1963) Joint Linear Regression (<doi:10.1071/AR9630742>), Wricke (1962, 1964) Ecovalence, Shukla's stability variance parameter (1972) (<doi:10.1038/hdy.1972.87>) and Kang's (1991) (<doi:10.2134/agronj1991.00021962008300010037x>) simultaneous selection for high yielding and stable parameter.

Authors:Muhammad Yaseen [aut, cre], Kent M. Eskridge [aut, ctb], Ghulam Murtaza [aut, ctb]

stability_0.5.0.tar.gz
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stability.pdf |stability.html✨
stability/json (API)
NEWS

# Install 'stability' in R:

install.packages('stability', repos = c('https://myaseen208.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/myaseen208/stability/issues

Datasets:

ge_data - Data for Genotypes by Environment Interaction

On CRAN:

4.17 score 3 stars 1 packages 33 scripts 388 downloads 1 mentions 16 exports 47 dependencies

Last updated 6 years agofrom:bc1dc470c4. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 08 2024
R-4.5-win	OK	Nov 08 2024
R-4.5-linux	OK	Nov 08 2024
R-4.4-win	OK	Nov 08 2024
R-4.4-mac	OK	Nov 08 2024
R-4.3-win	OK	Nov 08 2024
R-4.3-mac	OK	Nov 08 2024

Exports:add_anova ammi ammi_biplot er_anova ge_effects ge_means gge_biplot indiv_anova stab_asv stab_dist stab_fox stab_kang stab_masv stab_measures stab_par stab_reg

Dependencies:boot cli colorspace cpp11 dplyr fansi farver generics ggfortify ggplot2 glue gridExtra gtable isoband labeling lattice lifecycle lme4 magrittr MASS Matrix matrixStats mgcv minqa munsell nlme nloptr pillar pkgconfig plyr purrr R6 RColorBrewer Rcpp RcppEigen reshape2 rlang scales stringi stringr tibble tidyr tidyselect utf8 vctrs viridisLite withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Additive ANOVA for Genotypes by Environment Interaction (GEI) model	add_anova add_anova.default
Additive Main Effects and Multiplicative Interaction (AMMI)	ammi ammi.default
Additive Main Effects and Multiplicative Interaction (AMMI) Biplot	ammi_biplot ammi_biplot.default
Eberhart & Russel’s Model ANOVA	er_anova er_anova.default
Data for Genotypes by Environment Interaction (GEI)	ge_data
Genotype by Environment Interaction Effects	ge_effects ge_effects.default
Genotype by Environment Interaction Means and Ranks	ge_means ge_means.default
Genotype plus Genotypes by Environment (GGE) Interaction Biplot	gge_biplot gge_biplot.default
Individual ANOVA for Each Environment	indiv_anova indiv_anova.default
Additive Main Effects and Multiplicative Interacion Stability Value	stab_asv stab_asv.default
Stability Distance in AMMI	stab_dist stab_dist.default
Stability Fox Function	stab_fox stab_fox.default
Stability Kang Function	stab_kang stab_kang.default
Modified Additive Main Effects and Multiplicative Interacion Stability Value	stab_masv stab_masv.default
Stability Measures for Genotypes by Environment Interaction (GEI)	stab_measures stab_measures.default
Stability Parameters for Genotypes by Environment Interaction (GEI)	stab_par stab_par.default
Individual Regression for each Genotype	stab_reg stab_reg.default
Stability Analysis of Genotype by Environment Interaction (GEI)	stability-package stability