Package: baystability 0.1.0

baystability: Bayesian Stability Analysis of Genotype by Environment Interaction (GEI)

Performs general Bayesian estimation method of linear–bilinear models for genotype × environment interaction. The method is explained in Perez-Elizalde, S., Jarquin, D., and Crossa, J. (2011) (<doi:10.1007/s13253-011-0063-9>).

Authors:Muhammad Yaseen [aut, cre], Diego Jarquin [aut, ctb], Sergio Perez-Elizalde [aut, ctb], Juan Burgueño [aut, ctb], Jose Crossa [aut, ctb]

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NEWS

# Install 'baystability' in R:

install.packages('baystability', repos = c('https://myaseen208.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/myaseen208/baystability/issues

Datasets:

cultivo2008 - Data for Genotypes by Environment Interaction
cultivo2009 - Data for Genotypes by Environment Interaction

On CRAN:

10 exports 0.70 score 118 dependencies 10 scripts 837 downloads

Last updated 6 years agofrom:46ae7f8ecd. Checks:OK: 1 NOTE: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 09 2024
R-4.5-win	NOTE	Sep 09 2024
R-4.5-linux	NOTE	Sep 09 2024
R-4.4-win	NOTE	Sep 09 2024
R-4.4-mac	NOTE	Sep 09 2024
R-4.3-win	NOTE	Sep 09 2024
R-4.3-mac	NOTE	Sep 09 2024

Exports:bayes_ammi e_eff g_eff ge_ammi ge_eff ge_mean ge_model ge_var matrix_k orthnorm

Dependencies:askpass backports base64enc bit bit64 blob boot broom bslib cachem callr cellranger cli clipr colorspace conflicted cpp11 crayon curl data.table DBI dbplyr digest dplyr dtplyr evaluate fansi farver fastmap fontawesome forcats fs gargle generics ggfortify ggplot2 glue googledrive googlesheets4 gridExtra gtable haven highr hms htmltools httr ids isoband jquerylib jsonlite knitr labeling lattice lifecycle lme4 lubridate magrittr MASS Matrix matrixStats memoise mgcv mime minqa modelr munsell nlme nloptr openssl pillar pkgconfig plyr prettyunits processx progress ps purrr R6 ragg rappdirs RColorBrewer Rcpp RcppEigen readr readxl rematch rematch2 reprex reshape2 rlang rmarkdown rstiefel rstudioapi rvest sass scales selectr stringi stringr sys systemfonts textshaping tibble tidyr tidyselect tidyverse timechange tinytex tzdb utf8 uuid vctrs viridisLite vroom withr xfun xml2 yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Bayesian Estimation of Genotype by Environment Interaction Model	bayes_ammi bayes_ammi.default
Data for Genotypes by Environment Interaction (GEI)	cultivo2008
Data for Genotypes by Environment Interaction (GEI)	cultivo2009
Environment Effects	e_eff e_eff.default
Genotype Effects	g_eff g_eff.default
AMMI of Genotype by Environment Interaction Model	ge_ammi ge_ammi.default
Genotype by Environment Interaction Effects	ge_eff ge_eff.default
Genotype by Environment Interaction Means	ge_mean ge_mean.default
Genotype by Environment Interaction Model	ge_model ge_model.default
Genotype by Environment Interaction Variances	ge_var ge_var.default
k Matrix	matrix_k matrix_k.default
Orthogonal Normalization	orthnorm orthnorm.default