Package: bayesammi 0.1.0

bayesammi: Bayesian Estimation of the Additive Main Effects and Multiplicative Interaction Model

Performs Bayesian estimation of the additive main effects and multiplicative interaction (AMMI) model. The method is explained in Crossa, J., Perez-Elizalde, S., Jarquin, D., Cotes, J.M., Viele, K., Liu, G. and Cornelius, P.L. (2011) (<doi:10.2135/cropsci2010.06.0343>).

Authors:Muhammad Yaseen [aut, cre], Jose Crossa [aut, ctb], Sergio Perez-Elizalde [aut, ctb], Diego Jarquin [aut, ctb], Jose Miguel Cotes [aut, ctb], Kert Viele [aut, ctb], Genzhou Liu [aut, ctb], Paul L. Cornelius [aut, ctb]

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bayesammi.pdf |bayesammi.html✨
bayesammi/json (API)
NEWS

# Install 'bayesammi' in R:

install.packages('bayesammi', repos = c('https://myaseen208.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/myaseen208/bayesammi/issues

Datasets:

Maiz - Data for Genotypes by Environment Interaction

On CRAN:

10 exports 0.70 score 48 dependencies 9 scripts 844 downloads

Last updated 6 years agofrom:0591941df2. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 05 2024
R-4.5-win	OK	Sep 05 2024
R-4.5-linux	OK	Sep 05 2024
R-4.4-win	OK	Sep 05 2024
R-4.4-mac	OK	Sep 05 2024
R-4.3-win	OK	Sep 05 2024
R-4.3-mac	OK	Sep 05 2024

Exports:bayes_ammi e_eff g_eff ge_ammi ge_eff ge_mean ge_model ge_var matrix_k orthnorm

Dependencies:boot cli colorspace cpp11 dplyr fansi farver generics ggplot2 glue gmm gtable isoband labeling lattice lifecycle lme4 magrittr MASS Matrix mgcv minqa munsell mvtnorm nlme nloptr pillar pkgconfig purrr R6 RColorBrewer Rcpp RcppEigen rlang rstiefel sandwich scales stringi stringr tibble tidyr tidyselect tmvtnorm utf8 vctrs viridisLite withr zoo

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Bayesian Estimation of the Additive Main Effects and Multiplicative Interaction Model	bayes_ammi bayes_ammi.default
Environment Effects	e_eff e_eff.default
Genotype Effects	g_eff g_eff.default
AMMI of Genotype by Environment Interaction Model	ge_ammi ge_ammi.default
Genotype by Environment Interaction Effects	ge_eff ge_eff.default
Genotype by Environment Interaction Means	ge_mean ge_mean.default
Genotype by Environment Interaction Model	ge_model ge_model.default
Genotype by Environment Interaction Variances	ge_var ge_var.default
Data for Genotypes by Environment Interaction (GEI)	Maiz
k Matrix	matrix_k matrix_k.default
Orthogonal Normalization	orthnorm orthnorm.default